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Proteotools is a website, http://proteotools.pharmacy.arizona.edu, which hosts a collection of web based tools and downloadable Windows applications for doing proteomic and related work.
Components of new site for Proteomics
Cleaver is a tool for digesting amino acid sequences and generating a list of peptides in FASTA format.
imgtool is a Windows application that converts ANALYZE 7.5 files to text so they may be imported into MATLAB.
IonGen is a Windows application for generating b and y ions for peptides with and without modifications.
MzxmlMerge is a Java application for merging all the mzXML files in a directory into a singel file called merged.mzXML.
P-Mod is a Windows application for generating theoretical scans and comparing them with experimental data to find statistically probable matches.
SALSA is a Windows application for searching Mass Spec experiment data using various methods.
SpecPlot is a Windows application for plotting spectra and annotation of b and y ions, singly and doubly charged ions and various loss ions.
Proteotools was written by Sean Davey.